PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.338950.1
Common NameCsa_3G826680, LOC101204974
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family ZF-HD
Protein Properties Length: 293aa    MW: 31446.9 Da    PI: 8.4049
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.338950.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer112.22.6e-3560116358
     ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRreve 58 
                     +v+YkeClkNhAaslGgha+DGCgEfmps++++ +++++lkCaACgCHRnFHRre++
  Cucsa.338950.1  60 QVVYKECLKNHAASLGGHALDGCGEFMPSPTATaTDPTSLKCAACGCHRNFHRREPD 116
                     799****************************99999******************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257744.0E-1961123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047704.1E-2961115IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.41863114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015666.3E-3263114IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.19E-19194261IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-30196262IPR009057Homeodomain-like
TIGRFAMsTIGR015652.2E-26200257IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDLTPAISTA AATISTGGGA VKSPELESET PIKIQPTTKS HPFTNGVLKR HHHTAPPPPQ  60
VVYKECLKNH AASLGGHALD GCGEFMPSPT ATATDPTSLK CAACGCHRNF HRREPDDPIA  120
TPTTTHVIEY QPHHRHHPPP PSTAAAAHRS PSSASPPPIS SSYYPSAPHM LLALSGVLPE  180
NAGGGGGFHH TILTPSPNSR KRFRTKFTQN QKERMYEFAE KVGWKIQKRD EDMIQEFCSD  240
VGVDRGVLKV WMHNNKNTLG KKDGGRNMNG SGGEGDGDEK INGGGEPHAT TNX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A2e-221992581675ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6818410.0LN681841.1 Cucumis melo genomic scaffold, anchoredscaffold00011.
GenBankLN7132580.0LN713258.1 Cucumis melo genomic chromosome, chr_4.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004147471.10.0PREDICTED: zinc-finger homeodomain protein 9-like
SwissprotQ9LHF04e-81ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A0A0LFA10.0A0A0A0LFA1_CUCSA; Uncharacterized protein
STRINGVIT_14s0108g00750.t012e-93(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19793188
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.14e-74homeobox protein 34
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]